HL_5J4D_167

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

5J4D|1|GB|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_167 not in the Motif Atlas

Homologous match to HL_5J7L_162

Geometric discrepancy: 0.5594

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J4D|1|GB|G|1087
5J4D|1|GB|A|1088
5J4D|1|GB|G|1089
5J4D|1|GB|U|1090
5J4D|1|GB|G|1091
5J4D|1|GB|C|1092
5J4D|1|GB|G|1093
5J4D|1|GB|U|1094
5J4D|1|GB|A|1095
5J4D|1|GB|A|1096
5J4D|1|GB|U|1097
5J4D|1|GB|A|1098
5J4D|1|GB|G|1099
5J4D|1|GB|C|1100
5J4D|1|GB|U|1101
5J4D|1|GB|C|1102

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L36

Chain NB

50S ribosomal protein L6