HL_5J4D_186
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|GB|A|1913, 5J4D|1|GB|C|1914, 5J4D|1|GB|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_186 not in the Motif Atlas
- Geometric match to HL_8P9A_160
- Geometric discrepancy: 0.2091
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|GB|C|1909
5J4D|1|GB|G|1910
5J4D|1|GB|PSU|1911
5J4D|1|GB|A|1912
5J4D|1|GB|A|1913
5J4D|1|GB|C|1914
5J4D|1|GB|5MU|1915
5J4D|1|GB|A|1916
5J4D|1|GB|PSU|1917
5J4D|1|GB|A|1918
5J4D|1|GB|A|1919
5J4D|1|GB|4OC|1920
5J4D|1|GB|G|1921
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain FB
- Small subunit ribosomal RNA; SSU rRNA
- Chain NC
- Transfer RNA; tRNA
- Chain OC
- Peptide chain release factor 1
- Chain ZC
- 30S ribosomal protein S12
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