HL_5J4D_192

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5J4D|1|GB|A|2268, 5J4D|1|GB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_192 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.0693

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5J4D|1|GB|C|2264
5J4D|1|GB|U|2265
5J4D|1|GB|A|2266
5J4D|1|GB|A|2267
5J4D|1|GB|A|2268
5J4D|1|GB|A|2269
5J4D|1|GB|G|2270
5J4D|1|GB|G|2271
5J4D|1|GB|U|2272
5J4D|1|GB|A|2273
5J4D|1|GB|A|2274
5J4D|1|GB|C|2275
5J4D|1|GB|G|2276

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain SB

50S ribosomal protein L16