HL_5J5B_029
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 5J5B|1|AA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J5B_029 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.0439
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J5B|1|AA|G|1356
5J5B|1|AA|A|1357
5J5B|1|AA|U|1358
5J5B|1|AA|C|1359
5J5B|1|AA|A|1360
5J5B|1|AA|G|1361
5J5B|1|AA|A|1362
5J5B|1|AA|A|1363
5J5B|1|AA|U|1364
5J5B|1|AA|G|1365
5J5B|1|AA|C|1366
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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