HL_5J5B_084

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

5J5B|1|CA|A|751, 5J5B|1|CA|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_084 not in the Motif Atlas

Homologous match to HL_5J7L_155

Geometric discrepancy: 0.0408

The information below is about HL_5J7L_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5J5B|1|CA|U|744
5J5B|1|CA|1MG|745
5J5B|1|CA|PSU|746
5J5B|1|CA|5MU|747
5J5B|1|CA|G|748
5J5B|1|CA|A|749
5J5B|1|CA|A|750
5J5B|1|CA|A|751
5J5B|1|CA|A|752
5J5B|1|CA|A|753

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain C3

50S ribosomal protein L34

Chain CD

50S ribosomal protein L3

Chain CT

50S ribosomal protein L22