HL_5J5B_138
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J5B_138 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.0373
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5J5B|1|DA|U|158
5J5B|1|DA|G|159
5J5B|1|DA|A|160
5J5B|1|DA|A|161
5J5B|1|DA|U|162
5J5B|1|DA|C|163
5J5B|1|DA|C|164
5J5B|1|DA|A|165
5J5B|1|DA|U|166
5J5B|1|DA|A|167
5J5B|1|DA|G|168
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DY
- 50S ribosomal protein L28
Coloring options: