HL_5J5B_145

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5J5B|1|DA|G|386, 5J5B|1|DA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_145 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0275

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J5B|1|DA|A|382
5J5B|1|DA|C|383
5J5B|1|DA|A|384
5J5B|1|DA|C|385
5J5B|1|DA|G|386
5J5B|1|DA|U|387
5J5B|1|DA|G|388
5J5B|1|DA|G|389
5J5B|1|DA|U|390
5J5B|1|DA|A|391
5J5B|1|DA|U|392

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DY

50S ribosomal protein L28