HL_5J7L_091

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

5J7L|1|CA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_091 not in the Motif Atlas

Homologous match to HL_5J7L_162

Geometric discrepancy: 0.0318

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J7L|1|CA|G|1087
5J7L|1|CA|A|1088
5J7L|1|CA|A|1089
5J7L|1|CA|A|1090
5J7L|1|CA|G|1091
5J7L|1|CA|C|1092
5J7L|1|CA|G|1093
5J7L|1|CA|U|1094
5J7L|1|CA|A|1095
5J7L|1|CA|A|1096
5J7L|1|CA|U|1097
5J7L|1|CA|A|1098
5J7L|1|CA|G|1099
5J7L|1|CA|C|1100
5J7L|1|CA|U|1101
5J7L|1|CA|C|1102

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L11