HL_5J88_145

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5J88|1|DA|G|386, 5J88|1|DA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_145 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0621

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J88|1|DA|A|382
5J88|1|DA|C|383
5J88|1|DA|A|384
5J88|1|DA|C|385
5J88|1|DA|G|386
5J88|1|DA|U|387
5J88|1|DA|G|388
5J88|1|DA|G|389
5J88|1|DA|U|390
5J88|1|DA|A|391
5J88|1|DA|U|392

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DY

50S ribosomal protein L28