HL_5J8A_017
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5J8A|1|AA|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8A_017 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0251
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5J8A|1|AA|G|786
5J8A|1|AA|A|787
5J8A|1|AA|U|788
5J8A|1|AA|U|789
5J8A|1|AA|A|790
5J8A|1|AA|G|791
5J8A|1|AA|A|792
5J8A|1|AA|U|793
5J8A|1|AA|A|794
5J8A|1|AA|C|795
5J8A|1|AA|C|796
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain AU
- 30S ribosomal protein S21
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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