HL_5J8A_074

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5J8A|1|CA|G|386, 5J8A|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_074 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0529

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|A|382
5J8A|1|CA|C|383
5J8A|1|CA|A|384
5J8A|1|CA|C|385
5J8A|1|CA|G|386
5J8A|1|CA|U|387
5J8A|1|CA|G|388
5J8A|1|CA|G|389
5J8A|1|CA|U|390
5J8A|1|CA|A|391
5J8A|1|CA|U|392

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CY

50S ribosomal protein L28