3D structure

PDB id
5J8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
5J8A|1|DA|A|751, 5J8A|1|DA|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J8A_155 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0271
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

5J8A|1|DA|U|744
5J8A|1|DA|1MG|745
5J8A|1|DA|PSU|746
5J8A|1|DA|5MU|747
5J8A|1|DA|G|748
5J8A|1|DA|A|749
5J8A|1|DA|A|750
5J8A|1|DA|A|751
5J8A|1|DA|A|752
5J8A|1|DA|A|753

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L32
Chain D3
50S ribosomal protein L34
Chain DD
50S ribosomal protein L3
Chain DT
50S ribosomal protein L22

Coloring options:


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