HL_5J8B_001
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_001 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.0855
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|A|U|57
5J8B|1|A|G|58
5J8B|1|A|G|59
5J8B|1|A|C|60
5J8B|1|A|U|61
5J8B|1|A|A|62
5J8B|1|A|C|63
5J8B|1|A|C|64
5J8B|1|A|U|65
5J8B|1|A|G|66
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L29
- Chain 7
- 50S ribosomal protein L34
- Chain X
- 50S ribosomal protein L23
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