HL_5J8B_016

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

5J8B|1|A|A|571

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.1281

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|A|C|567
5J8B|1|A|G|568
5J8B|1|A|C|569
5J8B|1|A|A|571
5J8B|1|A|G|572

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L13

Chain V

50S ribosomal protein L21