HL_5J8B_029
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 5J8B|1|A|A|1115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_029 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.18
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J8B|1|A|C|1109
5J8B|1|A|U|1110
5J8B|1|A|U|1111
5J8B|1|A|A|1112
5J8B|1|A|G|1113
5J8B|1|A|A|1114
5J8B|1|A|A|1115
5J8B|1|A|G|1116
5J8B|1|A|C|1117
5J8B|1|A|A|1118
5J8B|1|A|G|1119
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L11
- Chain Q
- 50S ribosomal protein L16
- Chain w
- Transfer RNA; tRNA
- Chain z
- GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4
Coloring options: