HL_5J8B_051
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5J8B|1|A|A|2051, 5J8B|1|A|A|2052, 5J8B|1|A|G|2053
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_051 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0548
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|A|G|2048
5J8B|1|A|U|2049
5J8B|1|A|G|2050
5J8B|1|A|A|2051
5J8B|1|A|A|2052
5J8B|1|A|G|2053
5J8B|1|A|A|2054
5J8B|1|A|U|2055
5J8B|1|A|G|2056
5J8B|1|A|C|2057
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
Coloring options: