HL_5J8B_055

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5J8B|1|A|A|2279, 5J8B|1|A|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_055 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0451

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5J8B|1|A|C|2275
5J8B|1|A|U|2276
5J8B|1|A|A|2277
5J8B|1|A|A|2278
5J8B|1|A|A|2279
5J8B|1|A|A|2280
5J8B|1|A|G|2281
5J8B|1|A|G|2282
5J8B|1|A|U|2283
5J8B|1|A|A|2284
5J8B|1|A|A|2285
5J8B|1|A|C|2286
5J8B|1|A|G|2287

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain Q

50S ribosomal protein L16