HL_5J8B_062

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5J8B|1|A|G|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_062 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0647

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5J8B|1|A|U|2539
5J8B|1|A|G|2540
5J8B|1|A|A|2541
5J8B|1|A|A|2542
5J8B|1|A|G|2543
5J8B|1|A|A|2544
5J8B|1|A|A|2545
5J8B|1|A|G|2546

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain z

GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4