HL_5J8B_073
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_073 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0537
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J8B|1|a|U|13
5J8B|1|a|U|14
5J8B|1|a|U|15
5J8B|1|a|G|16
5J8B|1|a|A|17
5J8B|1|a|U|18
5J8B|1|a|C|19
5J8B|1|a|C|20
5J8B|1|a|U|21
5J8B|1|a|G|22
5J8B|1|a|G|23
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S5
- Chain v
- mRNA
Coloring options: