HL_5J8B_097
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAAGUC
- Length
- 8 nucleotides
- Bulged bases
- 5J8B|1|a|G|1077
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_097 not in the Motif Atlas
- Homologous match to HL_4LFB_025
- Geometric discrepancy: 0.1128
- The information below is about HL_4LFB_025
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
5J8B|1|a|G|1072
5J8B|1|a|U|1073
5J8B|1|a|U|1074
5J8B|1|a|A|1075
5J8B|1|a|A|1076
5J8B|1|a|G|1077
5J8B|1|a|U|1078
5J8B|1|a|C|1079
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
Coloring options: