3D structure

PDB id
5J8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
5J8B|1|a|G|1077
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J8B_097 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.1128
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_63894.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
18

Unit IDs

5J8B|1|a|G|1072
5J8B|1|a|U|1073
5J8B|1|a|U|1074
5J8B|1|a|A|1075
5J8B|1|a|A|1076
5J8B|1|a|G|1077
5J8B|1|a|U|1078
5J8B|1|a|C|1079

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain g
30S ribosomal protein S7

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1995 s