HL_5J8B_108
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5J8B|1|x|C|16, 5J8B|1|x|G|18, 5J8B|1|x|G|19, 5J8B|1|x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_108 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1421
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5J8B|1|x|C|13
5J8B|1|x|A|14
5J8B|1|x|G|15
5J8B|1|x|C|16
5J8B|1|x|C|17
5J8B|1|x|U|17|||A
5J8B|1|x|G|18
5J8B|1|x|G|19
5J8B|1|x|U|20
5J8B|1|x|A|21
5J8B|1|x|G|22
Current chains
- Chain x
- P-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
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