HL_5J8B_117

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

5J8B|1|a|U|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_117 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2546

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J8B|1|a|G|1116
5J8B|1|a|G|1117
5J8B|1|a|U|1118
5J8B|1|a|U|1119
5J8B|1|a|C|1120
5J8B|1|a|G|1121
5J8B|1|a|G|1122
5J8B|1|a|C|1123
5J8B|1|a|C|1124

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9