HL_5J8B_119

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

A(PSU)UGAA(MIA)A(PSU)

Length

9 nucleotides

Bulged bases

5J8B|1|y|U|33, 5J8B|1|y|G|34

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5J8B|1|y|A|31
5J8B|1|y|PSU|32
5J8B|1|y|U|33
5J8B|1|y|G|34
5J8B|1|y|A|35
5J8B|1|y|A|36
5J8B|1|y|MIA|37
5J8B|1|y|A|38
5J8B|1|y|PSU|39

Current chains

Chain y

E-site tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain g

30S ribosomal protein S7

Chain k

30S ribosomal protein S11

Chain v

mRNA

Chain x

Transfer RNA; tRNA