HL_5J91_145

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5J91|1|DA|G|386, 5J91|1|DA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_145 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0275

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J91|1|DA|A|382
5J91|1|DA|C|383
5J91|1|DA|A|384
5J91|1|DA|C|385
5J91|1|DA|G|386
5J91|1|DA|U|387
5J91|1|DA|G|388
5J91|1|DA|G|389
5J91|1|DA|U|390
5J91|1|DA|A|391
5J91|1|DA|U|392

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DY

50S ribosomal protein L28