HL_5JBH_033
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5JBH|1|4|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JBH_033 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1212
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
5JBH|1|4|G|32
5JBH|1|4|OMC|33
5JBH|1|4|U|34
5JBH|1|4|C|35
5JBH|1|4|A|36
5JBH|1|4|U|37
5JBH|1|4|A|38
5JBH|1|4|A|39
5JBH|1|4|C|40
Current chains
- Chain 4
- initiator Met-tRNA fMet from E. coli (A1U72 variant)
Nearby chains
- Chain 1
- aIF1
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- mRNA
- Chain K
- 30S ribosomal protein uS9
- Chain O
- 30S ribosomal protein uS13
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