HL_5JC9_067

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_067 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.0339

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JC9|1|CA|U|158
5JC9|1|CA|G|159
5JC9|1|CA|A|160
5JC9|1|CA|A|161
5JC9|1|CA|U|162
5JC9|1|CA|C|163
5JC9|1|CA|C|164
5JC9|1|CA|A|165
5JC9|1|CA|U|166
5JC9|1|CA|A|167
5JC9|1|CA|G|168

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CY

50S ribosomal protein L28