HL_5JC9_074

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5JC9|1|CA|G|386, 5JC9|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_074 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0681

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5JC9|1|CA|A|382
5JC9|1|CA|C|383
5JC9|1|CA|A|384
5JC9|1|CA|C|385
5JC9|1|CA|G|386
5JC9|1|CA|U|387
5JC9|1|CA|G|388
5JC9|1|CA|G|389
5JC9|1|CA|U|390
5JC9|1|CA|A|391
5JC9|1|CA|U|392

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CY

50S ribosomal protein L28