HL_5JC9_091

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GAAAGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

5JC9|1|CA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_091 not in the Motif Atlas

Homologous match to HL_5J7L_162

Geometric discrepancy: 0.0397

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JC9|1|CA|G|1087
5JC9|1|CA|A|1088
5JC9|1|CA|A|1089
5JC9|1|CA|A|1090
5JC9|1|CA|G|1091
5JC9|1|CA|C|1092
5JC9|1|CA|G|1093
5JC9|1|CA|U|1094
5JC9|1|CA|A|1095
5JC9|1|CA|A|1096
5JC9|1|CA|U|1097
5JC9|1|CA|A|1098
5JC9|1|CA|G|1099
5JC9|1|CA|C|1100
5JC9|1|CA|U|1101
5JC9|1|CA|C|1102

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L11