HL_5JCS_035

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCUUGUA

Length

7 nucleotides

Bulged bases

5JCS|1|x|U|2067

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_035 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2842

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JCS|1|x|U|2065
5JCS|1|x|C|2066
5JCS|1|x|U|2067
5JCS|1|x|U|2068
5JCS|1|x|G|2069
5JCS|1|x|U|2070
5JCS|1|x|A|2071

Current chains

Chain x

25S ribosomal RNA

Nearby chains