HL_5JCS_036

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCUAAUUAAAAC

Length

13 nucleotides

Bulged bases

5JCS|1|x|A|2138, 5JCS|1|x|A|2139, 5JCS|1|x|U|2140, 5JCS|1|x|A|2142, 5JCS|1|x|A|2144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|2134
5JCS|1|x|U|2135
5JCS|1|x|C|2136
5JCS|1|x|U|2137
5JCS|1|x|A|2138
5JCS|1|x|A|2139
5JCS|1|x|U|2140
5JCS|1|x|U|2141
5JCS|1|x|A|2142
5JCS|1|x|A|2143
5JCS|1|x|A|2144
5JCS|1|x|A|2145
5JCS|1|x|C|2146

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain j

60S ribosomal protein L37-A