HL_8GLP_050

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8GLP|1|L5|A|3642, 8GLP|1|L5|A|3643, 8GLP|1|L5|U|3644, 8GLP|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_050 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2941

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8GLP|1|L5|G|3638
8GLP|1|L5|PSU|3639
8GLP|1|L5|U|3640
8GLP|1|L5|U|3641
8GLP|1|L5|A|3642
8GLP|1|L5|A|3643
8GLP|1|L5|U|3644
8GLP|1|L5|U|3645
8GLP|1|L5|A|3646
8GLP|1|L5|A|3647
8GLP|1|L5|A|3648
8GLP|1|L5|A|3649
8GLP|1|L5|C|3650

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain Lj

60S ribosomal protein L37