HL_5JCS_037

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

5JCS|1|x|G|2169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_037 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.3641

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5JCS|1|x|C|2163
5JCS|1|x|A|2164
5JCS|1|x|G|2165
5JCS|1|x|A|2166
5JCS|1|x|A|2167
5JCS|1|x|A|2168
5JCS|1|x|G|2169
5JCS|1|x|U|2170
5JCS|1|x|G|2171

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A