HL_5JCS_039

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

5JCS|1|x|A|2255, 5JCS|1|x|C|2257

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_039 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3306

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5JCS|1|x|G|2253
5JCS|1|x|U|2254
5JCS|1|x|A|2255
5JCS|1|x|A|2256
5JCS|1|x|C|2257
5JCS|1|x|U|2258
5JCS|1|x|A|2259
5JCS|1|x|U|2260
5JCS|1|x|G|2261
5JCS|1|x|A|2262
5JCS|1|x|C|2263

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain r

Protein SDA1