HL_5JCS_056
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_056 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.3752
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_65794.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5JCS|1|y|C|47
5JCS|1|y|A|48
5JCS|1|y|G|49
5JCS|1|y|C|50
5JCS|1|y|G|51
5JCS|1|y|A|52
5JCS|1|y|A|53
5JCS|1|y|A|54
5JCS|1|y|U|55
5JCS|1|y|G|56
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Large subunit ribosomal RNA; LSU rRNA
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