HL_5JCS_059

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGUAUUCC

Length

8 nucleotides

Bulged bases

5JCS|1|y|U|125, 5JCS|1|y|U|127, 5JCS|1|y|U|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_059 not in the Motif Atlas

Geometric match to HL_2B3J_001

Geometric discrepancy: 0.341

The information below is about HL_2B3J_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41169.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

4

Unit IDs

5JCS|1|y|G|123
5JCS|1|y|G|124
5JCS|1|y|U|125
5JCS|1|y|A|126
5JCS|1|y|U|127
5JCS|1|y|U|128
5JCS|1|y|C|129
5JCS|1|y|C|130

Current chains

Chain y

5.8S ribosomal RNA

Nearby chains

Chain x

Large subunit ribosomal RNA; LSU rRNA