HL_5JCS_060

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUCCCGUCCGAUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_060 not in the Motif Atlas

Geometric match to HL_5TBW_238

Geometric discrepancy: 0.2837

The information below is about HL_5TBW_238

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81622.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

2

Unit IDs

5JCS|1|z|U|32
5JCS|1|z|U|33
5JCS|1|z|C|34
5JCS|1|z|C|35
5JCS|1|z|C|36
5JCS|1|z|G|37
5JCS|1|z|U|38
5JCS|1|z|C|39
5JCS|1|z|C|40
5JCS|1|z|G|41
5JCS|1|z|A|42
5JCS|1|z|U|43
5JCS|1|z|C|44
5JCS|1|z|A|45

Current chains

Chain z

5S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A

Chain x

Large subunit ribosomal RNA; LSU rRNA