Motif HL_81622.1 Version HL_81622.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-3 | 1-14 | 4-14 | 5-10 | 6-12 | 7-11 | 10-13 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_228 | 8C3A | 0.0000 | 0 | 3 | 5S rRNA | U | 32 | C | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | U | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | ntSH | tSH | tSW |
2 | HL_5TBW_238 | 5TBW | 0.0943 | 0 | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSH | tSH | tSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCCCCGUUCGAUCA | 1 |
UUCCCGUCCGAUCA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCCCGUUCGAUC | 1 |
UCCCGUCCGAUC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Heat map statistics
- Min 0.09 | Avg 0.05 | Max 0.09
Coloring options: