HL_5JCS_076
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUAGUCCCUCGGAAUUUGAGGCUAG
- Length
- 25 nucleotides
- Bulged bases
- 5JCS|1|x|C|2772, 5JCS|1|x|G|2777, 5JCS|1|x|G|2778
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_076 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.391
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JCS|1|x|U|2767
5JCS|1|x|U|2768
5JCS|1|x|A|2769
5JCS|1|x|G|2770
5JCS|1|x|U|2771
5JCS|1|x|C|2772
5JCS|1|x|C|2773
5JCS|1|x|C|2774
5JCS|1|x|U|2775
5JCS|1|x|C|2776
5JCS|1|x|G|2777
5JCS|1|x|G|2778
5JCS|1|x|A|2779
5JCS|1|x|A|2780
5JCS|1|x|U|2781
5JCS|1|x|U|2782
5JCS|1|x|U|2783
5JCS|1|x|G|2784
5JCS|1|x|A|2785
5JCS|1|x|G|2786
5JCS|1|x|G|2787
5JCS|1|x|C|2788
5JCS|1|x|U|2789
5JCS|1|x|A|2790
5JCS|1|x|G|2791
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
Coloring options: