HL_5JU8_032

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG(H2U)CGG(H2U)(H2U)AG

Length

11 nucleotides

Bulged bases

5JU8|1|AX|G|18

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_032 not in the Motif Atlas

Homologous match to HL_6CFJ_106

Geometric discrepancy: 0.1309

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5JU8|1|AX|C|13
5JU8|1|AX|A|14
5JU8|1|AX|G|15
5JU8|1|AX|H2U|16
5JU8|1|AX|C|17
5JU8|1|AX|G|17|||A
5JU8|1|AX|G|18
5JU8|1|AX|H2U|19
5JU8|1|AX|H2U|20
5JU8|1|AX|A|21
5JU8|1|AX|G|22

Current chains

Chain AX

P-site tRNA Aspartate

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5