HL_5JU8_049

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5JU8|1|BA|G|386, 5JU8|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1371

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5JU8|1|BA|A|382
5JU8|1|BA|C|383
5JU8|1|BA|A|384
5JU8|1|BA|C|385
5JU8|1|BA|G|386
5JU8|1|BA|U|387
5JU8|1|BA|G|388
5JU8|1|BA|G|389
5JU8|1|BA|U|390
5JU8|1|BA|A|391
5JU8|1|BA|U|392

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L28