HL_5JUO_003

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5JUO|1|A|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3381

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUO|1|A|G|154
5JUO|1|A|U|155
5JUO|1|A|A|156
5JUO|1|A|A|157
5JUO|1|A|U|158
5JUO|1|A|U|159
5JUO|1|A|C|160

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)

Chain DC

yeast eEF2

Chain VB

eS24 (yeast S24)