HL_5JUO_009
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_009 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.3673
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JUO|1|A|U|368
5JUO|1|A|A|369
5JUO|1|A|A|370
5JUO|1|A|G|371
5JUO|1|A|G|372
5JUO|1|A|G|373
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain GB
- uS4 (yeast S9)
- Chain IB
- uS17 (yeast S11)
- Chain TB
- uS8 (yeast S22)
- Chain UB
- uS12 (yeast S23)
- Chain ZA
- uS5 (yeast S2)
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