HL_5JUO_018

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

5JUO|1|A|A|780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_018 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2259

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUO|1|A|G|776
5JUO|1|A|C|777
5JUO|1|A|G|778
5JUO|1|A|U|779
5JUO|1|A|A|780
5JUO|1|A|U|781
5JUO|1|A|U|782
5JUO|1|A|G|783
5JUO|1|A|C|784

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain VB

eS24 (yeast S24)