HL_5JUO_019
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_019 not in the Motif Atlas
- Geometric match to HL_5TBW_044
- Geometric discrepancy: 0.3063
- The information below is about HL_5TBW_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUO|1|A|A|829
5JUO|1|A|U|830
5JUO|1|A|U|831
5JUO|1|A|U|832
5JUO|1|A|U|833
5JUO|1|A|G|834
5JUO|1|A|U|835
5JUO|1|A|U|836
5JUO|1|A|G|837
5JUO|1|A|G|838
5JUO|1|A|U|839
5JUO|1|A|U|840
5JUO|1|A|U|841
5JUO|1|A|C|842
5JUO|1|A|U|843
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain IB
- uS17 (yeast S11)
Coloring options: