HL_5JUO_020
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_020 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2514
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5JUO|1|A|A|900
5JUO|1|A|G|901
5JUO|1|A|G|902
5JUO|1|A|U|903
5JUO|1|A|G|904
5JUO|1|A|A|905
5JUO|1|A|A|906
5JUO|1|A|A|907
5JUO|1|A|U|908
5JUO|1|A|U|909
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CB
- uS7 (yeast S5)
- Chain EC
- IRES
- Chain LB
- uS11 (yeast S14)
Coloring options: