HL_5JUO_042

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

5JUO|1|B|U|210, 5JUO|1|B|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_042 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.184

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUO|1|B|C|208
5JUO|1|B|A|209
5JUO|1|B|U|210
5JUO|1|B|A|211
5JUO|1|B|G|212

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)