HL_5JUO_043

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5JUO|1|B|G|218, 5JUO|1|B|A|219, 5JUO|1|B|G|220

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_043 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.2476

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

5JUO|1|B|G|216
5JUO|1|B|U|217
5JUO|1|B|G|218
5JUO|1|B|A|219
5JUO|1|B|G|220
5JUO|1|B|A|221
5JUO|1|B|A|222
5JUO|1|B|U|223
5JUO|1|B|C|224

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)