HL_5JUO_044
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 5JUO|1|B|A|284, 5JUO|1|B|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_044 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.3813
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5JUO|1|B|U|278
5JUO|1|B|U|279
5JUO|1|B|U|280
5JUO|1|B|G|281
5JUO|1|B|G|282
5JUO|1|B|G|283
5JUO|1|B|A|284
5JUO|1|B|A|285
5JUO|1|B|U|286
5JUO|1|B|G|287
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
- Chain TA
- eL42 (yeast L42)
Coloring options: