HL_5JUO_124

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

5JUO|1|B|U|1606, 5JUO|1|B|U|1607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_124 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.3259

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5JUO|1|B|G|1599
5JUO|1|B|U|1600
5JUO|1|B|U|1601
5JUO|1|B|A|1602
5JUO|1|B|A|1603
5JUO|1|B|G|1604
5JUO|1|B|A|1605
5JUO|1|B|U|1606
5JUO|1|B|U|1607
5JUO|1|B|C|1608

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain LA

eL34 (yeast L34)

Chain W

eL19 (yeast L19)