HL_5JUP_032
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5JUP|1|A|U|1557, 5JUP|1|A|U|1558, 5JUP|1|A|A|1559
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_032 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1899
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|A|A|1550
5JUP|1|A|U|1551
5JUP|1|A|U|1552
5JUP|1|A|G|1553
5JUP|1|A|U|1554
5JUP|1|A|A|1555
5JUP|1|A|A|1556
5JUP|1|A|U|1557
5JUP|1|A|U|1558
5JUP|1|A|A|1559
5JUP|1|A|U|1560
5JUP|1|A|U|1561
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain MB
- uS19 (yeast S15)
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
Coloring options: